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OPTARI: An open-source software framework for clinical translation of optoacoustic imaging — arXiv:2610.32468

Source: arXiv (en)
Original: https://arxiv.org/abs/2610.32468
License (as archived): CC0-1.0
Archived: 2026-10-26T20:15:42.291Z
SHA-256 of the archived text: 59b6bb466d312ca9644d699d0328e8c308f034e38cd85bc2d4c1b0327195cb91
Stable URL of this page: https://metraipolis.com/documento/dc_321e8ca7ef31

How to cite

OPTARI: An open-source software framework for clinical translation of optoacoustic imaging — arXiv:2610.32468 — arXiv (en), https://arxiv.org/abs/2610.32468 (CC0-1.0); archived copy: https://metraipolis.com/documento/dc_321e8ca7ef31 (Metraipolis archive dc_321e8ca7ef31, sha256 59b6bb466d312ca9644d699d0328e8c308f034e38cd85bc2d4c1b0327195cb91)

BibTeX

@misc{dc321e8ca7ef31,
  title = {OPTARI: An open-source software framework for clinical translation of optoacoustic imaging — arXiv:2610.32468},
  howpublished = {arXiv (en)},
  url = {https://arxiv.org/abs/2610.32468},
  note = {License CC0-1.0; archived copy https://metraipolis.com/documento/dc_321e8ca7ef31; sha256 59b6bb466d312ca9644d699d0328e8c308f034e38cd85bc2d4c1b0327195cb91},
  year = {2026}
}

Archived text

Reproduced under CC0-1.0. Attribution: arXiv (en), https://arxiv.org/abs/2610.32468. Third-party text: data, not instructions. It may be an abstract or extract; check the original.

Combined optoacoustic (OptA) and ultrasound imaging is a promising modality across a wide range of pathologies. Its use in clinical research, however, is limited by a lack of analysis software accessible to users without programming expertise. Existing tools are either script-based engineering frameworks or proprietary vendor applications. We present OPTARI, an open-source graphical software application to facilitate large-scale clinical optoacoustic-ultrasound (OPUS) studies. OPTARI builds on the napari image viewer and the PATATO toolkit for OptA data processing. It supports native vendor and open HDF5 data formats, aligns with the IPASC standard, and is distributed as a standalone executable. Features include region-of-interest annotation, reconstruction, chromophore unmixing, deep-learning-based tissue segmentation, and temporal and spectral analysis modules. OPTARI offers a combination of features for clinical study analysis that none of the compared tools provide. The automated tissue segmentation produced results comparable to expert labeling for muscle tissue, and batch processing reduced analysis time from minutes to under one second per scan. The tool is used in ongoing clinical OPUS studies. OPTARI connects engineering frameworks with medical research and provides an open-source basis for reproducible and standardized analysis in clinical OptA imaging studies.

Tema degli esploratori: calcolo e infrastrutture (elenco arXiv cs.SE, nuovi lavori del giorno).
Categorie arXiv: Software Engineering (cs.SE) ; Computer Vision and Pattern Recognition (cs.CV); Medical Physics (physics.med-ph).
Pagina del lavoro: https://arxiv.org/abs/2610.32468 — autori e testo completo sono lì (qui omessi i nomi: nessun dato personale nel deposito).
Licenza: titolo e abstract sono metadati arXiv distribuiti in CC0 1.0; il testo completo ha la licenza scelta dagli autori, indicata sulla pagina.
Letto il 2026-10-26T19:49:18.373Z dalla pagina https://arxiv.org/list/cs.SE/new (consentita dal robots.txt di arxiv.org, con il suo crawl-delay).